Generative AI for Molecular and Formulation Design

Designing molecules with targeted properties through AI and chemical knowledge

We develop AI methods to generate molecules with targeted properties and assess their practical accessibility. Our work spans surfactant design and cost-aware molecular screening, connecting candidate generation with the challenges of making or purchasing promising compounds.

The challenge

Molecular design starts with a desired set of properties and seeks structures that could provide them. Many different molecules may meet a target, but useful candidates must also be practical to make or purchase.

We develop AI methods to generate molecular candidates and assess their potential for further investigation. Our work combines property-driven design, demonstrated in surfactants, with tools that bring molecular cost and synthetic accessibility into candidate selection.

Our approach

Surfactant design

We use chemical language models to generate surfactant candidates with a target critical micelle concentration: the concentration at which surfactant molecules begin to form micelles. Our framework optimises molecular representations and checks whether they remain consistent when converted into structures and encoded again. Candidate re-ranking and minimal structural repairs help address invalid structures or deviations from the target, while interpretability analysis examines whether the designs follow established physical relationships.

Assessing molecular cost and accessibility

Promising molecular designs must also be practical to obtain. We developed MolPrice, a machine learning model that predicts molecular price as a proxy for synthetic accessibility. Trained on supplier data and extended through contrastive learning to distinguish purchasable molecules from synthetically complex structures, it supports rapid assessment of large candidate libraries. By bringing cost and accessibility into molecular screening, MolPrice helps prioritise candidates for further investigation.

Applications in industry

Surfactant and formulation development

Generate surfactant candidates against multiple performance targets and structural constraints to support ingredient selection for formulated products.

Cost-aware molecular screening

Prioritise molecular candidates using predicted price as a proxy for synthetic accessibility, helping focus further assessment on potentially affordable and accessible compounds.

Relevant publications

Our latest work in the area of generative ai for molecular and formulation design.

More publications on molecular design
  • Journal of Chemical Information and Modeling

    Graph-to-Graph Inverse Design of Surfactants under Multiobjective and Structural Constraints

    Alexander W. Rogers, Ruediger Zillmer, Amanda Lane, Adam Kowalski, Dongda Zhang

  • arXiv

    From Feasible to Practical: Pareto-Optimal Synthesis Planning

    Friedrich Hastedt, Dongda Zhang, Ehecatl Antonio del Río Chanona

  • Journal of Chemical Information and Modeling

    Improving Fidelity and Diversity in Chemical Language Transformers for Inverse Molecular Design

    Alexander W. Rogers, Ruediger Zillmer, Amanda Lane, Adam Kowalski, Dongda Zhang